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We used one publicly available microarray dataset of 295 patients with primary breast cancer from NKI cohort [35].
We examined mRNA expression levels of RANKL/RANK/OPG in a publicly available microarray dataset of 295 primary breast cancer patients.
Herein, we report our findings of the prognostic role of RANK/RANKL/OPG in a microarray dataset of 295 early-stage breast cancer patients.
Surprisingly, we found that RUNX3 expression level in HNSCC tissues was higher than that in normal tissues by a previously published microarray dataset of 41 HNSCC patients and 13 normal controls in our preliminary study [12] (Figure 1A).
To further determine the association of H3K27me3 with the level of CDKN1C expression in human breast tumors, we took the advantage of an independent microarray dataset of human breast tumors stained with H3K27me3 in Oncomine microarray database (www.oncomine.org).org
Thanks to our two-steps approach, we observe that RANK expression has a prognostic value in a microarray dataset of a breast cancer population, even though the lack of availability of SDFS in that dataset was a limit.
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This down-regulated expression of USP33 was observed in multiple microarray datasets of lung cancer and confirmed by qRT-PCR and immunohistochemical analysis.
3) Breast Stroma: comprised whole-genome microarray datasets of stroma samples from normal or tumor breasts; 4) Breast Organelle: comprised whole-genome microarray datasets of breast organelles; 5) MSCs: comprised whole-genome microarray datasets of MSCs; 6) Sarcomas: comprised whole-genome microarray datasets of varied types of sarcomas.
Microarray datasets of gene expression in female goldfish hypothalamus and telencephalon have been collected to represent four seasonal time points.
Two real microarray datasets of breast cancer are employed to test SWang method and other four tests.
The dataset samples included in the compendium were grouped into 6 Experiment Sets as follows: 1) Breast Cancer: comprised whole-genome microarray datasets of breast tumors; 2) Normal Breast: comprised whole-genome microarray datasets of normal tissue from invasive ductal or lobular breast carcinomas.
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