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A publicly available Affymetrix microarray dataset comprising ~24,000 genes was downloaded from AtGenExpress.
To investigate the clinical relevance of our observations, we analyzed a microarray dataset comprising 285 primary ovarian cancer patient specimens [ 19].
Expression of cPLA2 α was investigated in a second gene expression microarray dataset comprising 295 breast cancer patients from The Netherland Cancer Institute (van de Vijver et al, 2002).
Recently, we reported in Nagalla et al. [ 36] the discovery of three biologically distinct immune gene signatures, or metagenes, in a large microarray dataset comprising 1,954 breast tumor expression profiles.
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In order to assess whether therapy resistance might underlie the change of the tumor phenotype toward a mesenchymal/basal phenotype, we collected a cohort of 93 microarray datasets comprising murine xenografts of human tumors before and after hormonal therapies.
Because microarray datasets comprise tens of thousands of features (genes), they are usually used to test the dimension reduction techniques.
The microarray reference dataset comprised all genes that were flagged as present or marginal by the feature extraction software (GeneSpring, Agilent) for 6/6 microarrays.
The entire gene expression dataset comprising 48 microarrays has been deposited into Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/geo/ and can be accessed using accession number GSE25554.
The web application bc-GenExMiner [ 17] was used to compare the mRNA levels within each breast cancer molecular subtype on a dataset comprising 1210 microarrays.
A compilation dataset comprising 305 gene expression microarray observations and 4,217 genes from Escherichia coli MG1655 was obtained from the M3D database [30].
Data for many probesets in a given expression microarray dataset are comprised of noise but little or no biological signal.
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