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Hence, in the present study, we aimed at identifying the candidate lncRNA associated with tongue SCC using the microarray dataset available in the public microarray data repository.
The analysis of the large and heterogeneous whole-genome microarray dataset available in the public domain proved useful to evaluate principles that govern regulation of gene expression in plants.
The target genes that showed expression inversely-correlated with that of miRNAs were collected from the liver microarray dataset available as a supplementary file [48] and are indicated by an asterisk in Table S1.
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We have analyzed two different prostate cancer microarray datasets available in the public domain [8], [9].
To explore a possible connection between A. thaliana STSP and FBX pseudogenes and the stress/pathogen responses, we examined the expression correlations of all A. thaliana FBX genes in the full compilation of expression microarray datasets available at NASCArrays.
The relevance of the proposed methods can be evaluated using microarray datasets available in the public domain but the method is in principle applicable to other high-throughput methods.
To examine the expression of ING2 in men with low sperm count, morphologically abnormal sperm and/or impaired spermatogenesis, public microarray datasets available at GEO (http://www.ncbi.nlm.nih.gov/geo) and ArrayExpress (http://www.ebi.ac.uk/microarray-as/ae) were queried using the Nextbio search engine (http://www.nextbio.com) (Table 2).
To further substantiate the clinical data, we analysed tumor microarray datasets available at Oncomine™.
With the large number of microarray datasets available in the public domain for distinct disease phenotypes from various microarray platforms, cross-platform comparisons can currently be attempted.
In addition, we analyzed the RAB25 expression in HNSCC samples using previously described microarray datasets available in GEO (GEO25099, GSE23558, and GSE26549) [ 27– 29], Array Express (E-TABM-302) [ 30] and MIAME-VICE (Thurlow et al).
The absence of a positive correlation for DERL-1 expression between frozen and FFPE samples could have been due to the smaller number of FFPE samples.> To test the prediction capacity of the combined expression of the 8 genes in different conditions, we used microarray datasets available on the GEO website.
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