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They used GO category and MeSH term to analyze the microarray dataset and discovered that those changed genes were related with cell death, apoptosis, oxidative stress, inflammation, and neurotransmitters in the brain.
In the data collection and preprocessing step, gene expression clusters were identified from a microarray dataset and cluster expression levels were converted to discrete values.
We cross-correlated these results with our carbon starvation microarray dataset and found that the expression of a significant number of both cell-cycle regulated and non cell-cycle regulated CtrA targets was altered upon 30 min of carbon starvation (Table 2).
The SVM is applied again to classify the testing microarray dataset and restore the classification accuracy.
DJE helped design the study, provided the initial microarray dataset, and critically revised the manuscript.
Michelhaugh SK reanalyzed the existing Affymetrix microarray dataset and identified the 5 lncRNAs dysregulated in the heroin abusers [ 10].
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We apply our techniques to publicly available microarray datasets and compare our results with findings discussed in [36].
Here we describe the Rice Oligonucleotide Array Database (ROAD,http://www.ricearray.org), which integrates the most comprehensive public microarray datasets and provides several functional analysis tools.
We chose these treatments based on publicly available microarray datasets, and on the chaperone related functions of CRTs [12].
Mining of public DNA microarray datasets and a quantitative PCR study establish that SULF1 transcripts are upregulated in human pancreatic cancer (Table 1).
First, experimental samples were analyzed and conclusions were formulated; and second, experimental sets were combined with publicly available microarray datasets and were further analyzed in search of common DE genes.
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