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The National Science Foundation rice microarray database was used to match rice probeset identifiers to The Integrated Genome Resource (TIGR) identifiers for rice.
In order to improve specificity of the hybridization and to focus on a few numbers of functions of the genes (inflammation, muscle metabolism), an equine oligonucleotide microarray database was designed and validated according to the same methods as previously described [ 24, 31].
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Datasets from microarray database were then cross-referenced with publications retrieved from Medline and Embase.
The Stanley Foundation's microarray database is an anonymous, de-identified dataset without any protected health information.
Detailed information regarding downloaded datasets from the TAIR microarray database is listed in Additional file 10.
B. mori microarray database is composed of expression data for 22987 probes of 9 silkworm tissues on day 3 of the fifth instar in silkworm [ 25].
Considering the fact that public microarray database is consist of gene expression profiles of various experiments with various type of platform, pathway based gene expression similarity measuring method could be successfully applied for searching large public microarray databases.
Data mining of published microarray databases was used to determine the relative expression levels of Id4 in clinically relevant cases of prostate cancer as compared to controls and benign prostate hyperplasia.
At least two other public microarray databases are also in the works: The National Center for Genome Resources in Santa Fe, New Mexico, plans to open a database this fall, and the U.K.'s European Bioinformatics Institute (EBI) hopes to launch one next year.
The most popular public microarray databases are ArrayExpress [ 4], Gene Expression Omnibus (GEO) [ 5], NASCArrays [ 6] and Genevestigator [ 7].
The size of microarray databases is likely to increase exponentially in the future, as is typical for all molecular databases, increasing the need for sophisticated methods to analyze these large amounts of data appropriately.
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