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The immunohistochemical staining results for GRP94 and GRP78 were consistent with relative levels of Grp94 and Grp78 mRNA from the microarray database in the specific tissues being examined (Figure 11B).
RNA expression values in breast stromal samples were obtained from the microarray database in http://www.Oncomine.org, characterized by Finak et al. in previous studies [ 9, 50].
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The results may be a challenging evidence for usage of public microarray databases in microarray data analysis.
Based on data mining of published microarray databases in Oncomine database, we have shown that Id4 is highly expressed in the normal, normal adjacent, and benign prostates and its expression is significantly decreased in prostate cancer (metastatic prostate cancer
These nitrate experiments were not included in the microarray database used in the previous sections.
The microarray database deposited in NCBI/GEO contains the expression data of human Grp78 from each exon-exon junction probe in 44 human tissue samples and 8 human cancer cell lines.
Detailed information regarding downloaded datasets from the TAIR microarray database is listed in Additional file 10.
The first one is a microarray database search algorithm in an application called the Connectivity Map (CMAP) [ 53].
The processed and loess-normalized data as well as detailed experimental information according to MIAME [ 43] were stored in the in-house microarray database for further analysis [ 44].
However, in silico analysis of publicly-available microarray database shows OsClpC3 expression in stem, culm and leaf tissues.
To learn the general rules that govern gene expression in plants, we took advantage of a large microarray database available for Arabidopsis in the NASCarrays database [ 10].
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