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The microarray experiment, described according to MIAME guidelines, has been deposited in ArrayExpress microarray data repository (http://www.ebi.ac.uk/microarray-as/ae/).
For the microarray experiments described in this study, MIAME compliant protocols and datasets in Tab2MAGE are accessible from ArrayExpress microarray data repository [75] with the accession number E-TABM-553.
Resulting microarray data sets have been uploaded at the GEO microarray data repository [GEO GSE21802] [ 15].
In addition, a microarray data repository that will include all the custom microarray data sets is under development.
In addition, the data of Wei et al. is not available in a public microarray data repository.
Details regarding cDNA amplification, purification and printing are available through the ArrayExpress microarray data repository using the array accession number A-MEXP-266.
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Thousands of microarray data repositories have been created for gene expression investigation [1]; sophisticated cameras are becoming ubiquitous, generating a huge amount of visual data for surveillance; the Square Kilometre Array Telescope is being built for astrophysics research and is expected to generate several petabytes of astronoimcal data every year [2].
This enables novel uses of microarray data repositories and offers an advantage over existing analytical methods.
Other reports describing transcription profiling of stress responses in Arabidopsis have been published, and experiments of time courses of the responses of Arabidopsis to numerous stresses are available in public microarray data repositories.
However, if the user is unable to run several microarray experiments to estimate the robustness of specific pre-processing and statistical analysis methods, real data that mimic the experimental conditions can be freely obtained from public microarray data repositories (GEO [16], ArrayExpress [28]).
The number of data is still increasing in public microarray data repositories.
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