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Since the number of samples available for the RT PCR experiment was rather limited, we decided to expand these studies using in silico screenings with the microarray data present in the Oncomine site (www.oncomine.org).org
The microarray data present in this study has been sent in the MAIME (Minimum Information About a Microarray Experiment) compliant MAGE-TAB format to the ArrayExpress database (www.ebi.ac.uk/arrayexpress) where it soon will be made publicly available under an accession number[32].
Microarray data present values of gene expression levels that are referred to as signal intensities, while ESTs determine the numbers of ESTs that are believed to indicate the level of gene expression.
306 of the 1300 Intrinsic/UNC genes had microarray data present in the combined test set and were used in a two-way average-linkage hierarchical cluster analysis [ 44].
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All microarray data presented in this study is scheduled for upload and presentation by individual gene and time course at the genome web site, ToxoDB, which is part of EuPathDB (http://eupathdb.org/eupathdb/).
The microarray data presented here indicates that rice homologs of these ZIM transcription factors and OsMYC (or OsJIN1) are upregulated by ClsA treatment.
The microarray data presented here are available in the ArrayExpress database [64] (www.ebi.ac.uk/arrayexpress) under the accession number E-MEXP-2342 E-MEXP-2342 E-MEXP-2342
Glycan microarray data presented here will be made available online through the Consortium for Functional Glycomics website (http://www.functionalglycomics.org).org
While the microarray data presented here are fully MIAME compliant, the raw data has not been deposited in a MIAME compliant database because not all spotted clones on the arrays have been sequenced (only the significantly regulated clones were sequenced).
The microarray data presented in this publication have been deposited in the MIAME compliant data base – NCBI's Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/), and are accessible through GEO Series accession number GEO26084.
Microarray data presented in the PlasmoDB (http://www.plasmodb.org) show Pf332 to be transcribed in 3D7, Dd2 and HB3 parasites with a higher transcription level in HB3 iRBC than in the other strains.
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