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To answer this question, microarray data originating from two experimental procedures were analyzed by multiple methods employed for identification of consensus differences in pathways underlying CRC development through the adenoma-carcinoma sequence.
We generated a gene co-expression network from microarray data originating from a mouse model of MI.
We applied the methodology described above on microarray data originating from two sources that contain measurements from two or three classes of acute leukaemia.
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The microarray data originated from three experimental sets.
After integrating HPRD Human Protein Reference Databasee, http://www.hprd.org/) with a manually curated human signaling network acquired from Cui et al. [ 13], the over-expressed microarray data originated from human adrenal carcinoma cells treated with torcetrapib were mapped to construct the context-specific network.
Moreover, studies comparing data originating from different microarray platforms have reported poor inter-platform correlations (Kuo et al, 2002; Tan et al, 2003).
The data fulfil the requirements to be MIAME compliant.CEL-files for the NCI60 cell line microarrays were downloaded from http://www.ncbi.nlm.nih.gov/geo/ under GEO accession number GSE5720 by selecting the subset of data originating from the HG-U133A array.
This sub-component installs context data originating from a manifest.
The CIS samples included in the microarray data analysis originated from tissue next to different overt tumours (Almstrup et al, 2004).
The Arabidopsis stage 15 petal and inflorescence transcriptomic data originate from a microarray analysis (TAIR-ME00319; AtGenExpress: Expression Atlas of Arabidopsis Development) and were downloaded from TAIR (accessions numbers: HybData:1007126238 40 and HybData:1007126271 73).
In most cases, IBD is inferred from incomplete genotype data originated from resequencing [ 63], genotype imputation [ 64], or microarray genotyping for SNP discovered by the previous two methods [ 65].
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