Microarray data contain more tissues and developmental stages as compared to MPSS data.
It is still a challenge that how to improve SP and maximally extract the useful information from the microarray data by incorporating the information about the functional relationship between genes from the microarray data with relatively small sample size [10].
Several initiatives aim to extend the scope of public databases of microarray data to incorporate toxicology and biologic end points.
All the microarray data have been incorporated into the corresponding genomic data of the B. bovis strain (http://www.piroplasmadb.org) while the RNA-sequencing data have been deposited in NCBI's Gene Expression Omnibus and are accessible through GEO Series accession number GSE51560 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi acc=GSE51560).nih.gov/geo/query/acc.cgi acc=GSE51560
Regulatory network inference is the process of inferring these networks, traditionally from microarray data but increasingly incorporating other measurement types such as proteomics, ChIP-seq, metabolomics, and mass cytometry.
To our best knowledge, the studies on constructing a cell-specific IRN after IAV infection are limited, and an integrated and systematic analysis of the inflammatory cascade mediated by COX-2 that incorporates microarray data has not yet been reported.
A linear mixed model, which incorporates DNA microarray data, has confirmed twin results by showing substantial genetic influence for diverse traits in adults.
This approach has a solid theoretical foundation, offers a probabilistic framework to describe the variation typically observed in microarray data, accommodates missing data, and incorporates prior knowledge on gene relationships.
The interactome, incorporating the dioxin microarray data, is accessible both for graphic sub-network navigation and full download.
The presently developed data pipeline is set up to incorporate any new microarray data or other platforms, such as proteomics, and to make it available to the research community promptly on T1DBase.
