Sentence examples for microarray data deposition from inspiring English sources

Details about the microarray data deposition can be found at http://www.ncbi.nlm.nih.gov/geo (the GEO accession number is: GSE13494).

They thank Dr. B. MacCallum for useful help with microarray data deposition in Vectorbase.

Piwowar and Chapman (2008a) further studied the links existing between microarray data deposition in public repositories (e.g. GEO and ArrayExpress) and reports of data deposition in the literature.

Portability of the method: although trained mainly on microarray data deposition statements, the method adapts well to the identification of statements reporting on the deposition of other data such as gene sequences or protein coordinates.

A simple (i.e. only using sentence tokens as features) Naïve Bayes (NB) model was built using the 243 microarray data deposition statements as positive examples and ~ 33 000 sentences (the 110 above non-deposition statements, plus sentences from MEDLINE abstracts that contained the word 'deposit' or 'deposited') used as negative examples.

Microarray and data deposition: PH and JM.

Data Deposition: Microarray data curetted under GEO series accession numbers [GSE17650 & GSE18539].

Data deposition: The Affymetrix microarray data have been deposited in the Gene Expression Omnibus (GEO) database (GEO accession no. GSE24271).

Data deposition accession numbers: The microarray data have been deposited in NCBI's gene expression omnibus (GEO) accession number GSE34016 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi).nih.gov/geo/query/acc.cgi

17993534|This finding was confirmed by primer extension analysis (data not shown) and by recently deposited microarray data in the GEO database (http://www.ncbi.nlm.nih.gov/geo/ ; accession number GSE8478) Deposition: If the evidence statement shows the data were deposited.

For instance, Ochsner et al. (2008) found the deposition rate of microarray data to be <50% for work published in 2007.