In GSM1075, from [ 33], microarray data corresponds to total RNA extracted from yeast cells subjected to adenine starvation, after 30 minutes.
For those C. albicans and zebrafish proteins that were selected based on functional annotations, one-way analysis of variance (ANOVA) was applied on the gene expression profiles in our time-course microarray data that correspond to these proteins to further select differentially expressed proteins.
The accession numbers of cDNA clones from the microarray data that corresponded to differentially regulated genes were subjected to BLASTN searches against the expressed sequence tag (EST) database.
When subsets of the data were used, all sequence attributes were used but in combination with only sets of microarray data that corresponded to biological categories, such as stress, hormone treatment, root cell type expression profiles, or light manipulation.
Corresponding microarray data are shown for comparison.
CSF1 and IL-1β were found to be significantly increased at 24 h after wounding in both tongue and skin, but not at day 10 after wounding (Table 9), which corresponds to microarray data that identifies these two genes as belonging to an early upregulated cluster (cluster 1, 2 and 3).
These results correspond to the microarray data showing that these two genes are in an early down and late upregulated cluster (cluster 5).
In an attempt to assign certain cell wall related functions to the modules, we harvested material from the 29 tissues that corresponded to the microarray data sets above.
The correlation between qRT-PCR and microarray data is 0.7 (figure 2b), which corresponds to the value obtained in similar studies [ 20, 21]. Figure 2c shows the comparison of fold changes from qRT-PCR and microarray analysis.
The condition and replicate numbers correspond to those for the microarray data in Additional file 2, and information about each condition / replicate is given here.
