Sentence examples for microarray data correlation from inspiring English sources

To validate the microarray data, correlation was tested for fold changes measured by microarray and qPCR for all the selected genes.

QRT-PCR analysis of Ca2 confirmed the microarray data (correlation coefficient r = 0.95, 0.98, 0.82, and 0.78 for MmEE, MmTAM, RnEE and RnTAM, respectively; Figure 5).

In agreement with the microarray data, correlation clustering of the ΔCt values showed that the rbiPSC subpopulations showed fewer differences between them than with the rbESC subpopulations (Fig. 6B).

Median fluorescence levels of entire tissue sections for diseased and control subjects were measured for four candidate genes (ANXA2, ATP1A3, NRGN, and PVALB, see Figure 5), showing a strong correlation with the microarray data (correlation coefficient r = 0.97, comparing individual test and control averages for the four genes tested).

Expression levels accessed by microarray were compared to results from RNA-sequencing in the subset of the monocyte samples (n = 373), indicating excellent reproducibility of microarray data (correlations ranged from 0.45-0.86, median: 0.76).

The expression levels for miR-150, miR-193b, miR-187b and miR-196a, as determined by RT-PCR, were in concordance with the normalized microarray data (Pearson correlation coefficient >0.9, q value<0.001, Figure 2).

To assess the reproducibility of microarray data, the correlation coefficients of biological replicates were calculated using GeneSpring GX 11 software.

For comparison with microarray data, Spearman correlation was calculated between the Log2 (FC) provided by the microarray study and the Log2 (Ct) provided by the RT-qPCR study [ 73].

This confidence was supported by the results of qRT-PCR performed with 12 over-expressed and 4 under-expressed genes, which confirmed the microarray data (Spearman correlation coefficient: 0.81) [see Additional file 3 for the comparison between microarray and qRT-PCR results].

To evaluate the degree of correlation between qRT-PCR and microarray data a linear correlation analysis (Pearson) was performed.

Microarray data collection and correlation analysis was carried out by SBC (Shanghai Biochip Co., Ltd. China).