These numbers served as the input for the Affymetrix software, ExACT, which provided access to microarray data collected from 3 replicates each of 11 tissues (including breast, cerebellum, heart, kidney, liver, muscle, pancreas, prostate, spleen, testes and thyroid).
To this end, we reviewed published cDNA gene expression microarray data collected from a comprehensive panel of 50 BC cell lines [ 34].
Transcripts induced by 1 hr but not 3 hr of EGF stimulation were ordered based upon fold-induction using microarray data collected from cells without knockdown (No KD).
Transcriptional modules within this set of genes were identified in a much wider set of microarray data collected from leaves in a number of developmental, biotic, abiotic and transgenic experiments.
A predictive model, Support Vector Machine based on Recursive Feature Elimination and Cross Validation (SVM-RFE-CV), was proposed by Zhang, Deng and Drabier [ 3] for breast cancer early detection using microarray data collected from peripheral blood.
These results are consistent with the analysis of microarray data collected from mouse testis, from fetal age to adulthood (duplicates in 11, 12, 14, 16 and 18 days post-coitum (dpc), 0, 3, 6, 8, 10, 14, 18, 20, 30 and 35 dpp) which shows the time course of gene expression in murine testis development (GEO Datasets: GDS2098 and GSE12769).
While sequence coverage is admittedly smaller on microarrays, data collected from both ENCODE and promoter arrays have enabled us to define the importance of the CUX1 consensus binding site in the recruitment of CUX1 to genomic locations and determine whether CUX1 can regulate genes at a distance.
Tumor classification is performed on microarray data collected by DNA microarray experiments from tissue and cell samples [ 1- 3].
The gene expression profiles for the mouse genes analyzed were obtained from microarray data collected using 61 mouse tissues, including 53 adult tissues, 3 cell lines, and 5 early embryos from E6.5 to E10.5 [ 31].
Utilizing the B. bronchiseptica long-oligonucleotide microarray, ratio data collected from microarray analysis involving the direct comparison between B. bronchiseptica RB50 and RB54 revealed 1,668 Bvg-regulated genes (identified using SAM with a false discovery rate of <0.1%).
Do data obtained by using microarray experiments correlate with proteomic data collected from the same biological system and should we expect them to?
