Exact(1)
We then summed the average expression change for the induction and repression experiments for all combinations of spacings, and determined which combination predicted the microarray data best.
Similar(59)
Comparison with the Zhao results is not straightforward: while they achieve at best 70% sensitivity at the 100% specificity level using microarray data, their best result is 90%/100% sensitivity/specificity but only for one patient group (AA) and using RT-PCR data.
Compared to the GA methods tested in this study, ACO fits the AD microarray data the best when calculating gene order.
Herein, we reported that ACO fits the AD microarray data the best when calculating gene order in comparison to the GA methods tested in this study.
To make the best use of microarray data and avoid incorrect or unsubstantiated conclusions, care must be taken in the statistical analysis.
Among these, the method developed by Westfall and Young is best suited for microarray data analysis.
Finally, to make the best use of microarray data sets, individual patient data should be anonymously reported and electronically accessible.
The validation of gene cluster information presents a key challenge for the best use of microarray data.
More interlaboratory studies are needed to evaluate the reproducibility of RIN and its correlation to performance on multiple array formats before a RIN threshold can be recommended as a component of best practices for microarray data generation.
In the analysis of microarray data, AuxRE+/AuxRE-like+ composite elements showed the best results, revealing significant associations with auxin upregulated genes in ten out of sixteen microarray experiments.
The discrepancies of target genes expression between microarray data and real-time quantitative PCR results probably best reflects differences in the relative sensitivity and specificity of the two methods.
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