The present MPSS data do not include 630 genes that are detected in the upper 90th percentile levels in the human islet microarray data, which contains around 130 genes that lack a DpnII site.
The SGMD web interface provides on-the-fly statistics analysis to compare cDNA microarray data, which consists of around 4,000 spots and 20,000 EST sequences from the soybean root libraries [ 6].
On the right, the cluster of microarray data is centered around a core of large datasets exploring very diverse conditions and thus enriched for many different biological processes (Brem and Kruglyak, 2005; Brem et al., 2002; Hughes et al., 2000; Yvert et al., 2003).
This phenomenon is caused due to the "large p small n" paradigm which arises in microarray data, where there are generally around 20 thousand of genes or variables that were measured for each sample while only tens or at most hundreds of samples were considered in each experiment.
These microarray data could be useful for researchers around the world, but unfortunately they are underused.
Two following independent results of our computational analysis support the idea that functional AuxREs appeared to be enriched around TSS. First, microarray data analysis provides an insight that there is a strong association between the presence of potential AuxREs in the proximal promoter and 5'UTR and auxin responsiveness.
Normalization of microarray data ensures that the ratios are symmetrically distributed around a value of 1 (2), which is a prerequisite for further reliable data analyses [ 12].
Between the counterparts, around 63% showed similar expression patterns according to the microarray data.
The nucleosome positioning around PR1 gene in the tiling microarray data was examined.
Human microarray platform, GPL1528; human HCC microarray data, GSE1898; mouse microarray platform, GPL1529; mouse HCC microarray data, GSE1897.
