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Gene Ontology (GO) analysis of the microarray data annotated the DEGs to 285 GO terms.
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A section of the report page covers microarray expression data annotated using our Microarray Information Management and Annotation System (MIMAS) [ 33].
Microarray data were annotated using Affymetrix Expression Console (MAS5).
Co-regulated genes were identified using drought responsive microarray expression data annotated to the PathoPlant database [ 20, 21].
Microarray data using genes annotated in FunnyBase can be systematically analyzed in the context of biological functions.
To confirm these results, we used a maize microarray data set to annotate BDTPs and functionally characterized the activity of a sample of these BD PROs.
The eleven microarray data sets have been annotated in a MIAME compliant manner and deposited in EBI ArrayExpress (http://www.ebi.ac.uk/microarray-as/ae/.
Fully annotated microarray data have been deposited in BµG@Sbase (accession number E-BUGS-108; http://bugs.sgul.ac.uk/E-BUGS-108).
Fully annotated microarray data have been deposited in BµG@Sbase (accession number: E-BUGS-45; http://bugs.sgul.ac.uk/E-BUGS-45) ArrayExpressress (accession number: E-BUGS-45).
Fully annotated microarray data has been deposited in BµG@Sbase (accession number: E-BUGS-66; http://bugs.sgul.ac.uk/E-BUGS-66) alsoArrayExpresspress (accession number: E-BUGS-66).
Annotated microarray data were uploaded in the BASE database and formatted and exported to ArrayExpress at the European Bioinformatics Institute (http://www.ebi.ac.uk/microarray/) in agreement with the MIAME guidelines (E-TABM-718).
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