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The microarray data acquisition and analysis were described by Wayne et al. [ 16].
Images and data were acquired using a phosphorimager and standard microarray data acquisition software.
OK and KK performed all the steps from nucleic acid extraction to microarray data acquisition.
BWH constructed the microarray genechips and carried out microarray data acquisition.
JZL participated in sample preparation and microarray data acquisition and analysis.
RF conceived the study and performed all the steps from nucleic acid extraction to microarray data acquisition.
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Microarray hybridisation data acquisition and analysis was performed by PJA and AA with the assistance of MM, EG and VP.
After microarray raw data acquisition, data processing was performed using the web-accessible Micro Array Data Suites of Computed Analysis, MADSCAN resource (at [ 105]; [ 106]).
A.Č. tested, compared and optimized labeling and hybridization condition, performed all the RNA sample isolations, cDNA labeling, microarray hybridizations, data acquisition, and contributed to data analysis and interpretation.
Microarray scanning, data acquisition, and identification of probe sets showing significant differences (at P < 0.05) in expression levels between different conditions were performed by Roche-NimbleGen (www.nimblegen.com).
Microarray scanning, data acquisition and identification of probe sets showing a significant difference (p = 0.05) in expression level between the different conditions were performed essentially as described previously [ 13, 46].
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