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A whole-genome 70-mer oligonucleotide DNA microarray corresponding to each predicted open reading frame of the C. neoformans serotype D genome (strain JEC21) with additional genes of the MATa and MATα loci from all serotypes was used.
We prepared a gene chip microarray corresponding to the complete genome sequence of L. interrogans strain #56601.
Three probesets (from 11 available on microarray) corresponding to 1-aminocyclopropane-1-carboxylic acid oxidases (ACOs) were higher induced in Li 2 elongated fibers (Additional file 7).
When multiple probes were present in the microarray corresponding to a gene, we selected the probe with the highest absolute correlation.
Of a total of 270 probes on the cDNA microarray corresponding to 194 Arabidopsis genes implicated in lipid biology [ 33], thirty six genes were found to be differentially regulated in DGAT transgenic lines (Table 2).
Twelve RA vectors, six RA vectors from 454-sequencing and the six RA vectors from cDNA microarray, corresponding to the six tissue samples were paired in 12 × 12 = 144 possible combinations and the Pearson's correlation coefficient between the vectors in each combination was computed.
Similar(53)
miRNA microarrays corresponding to miRbase v9.0 (nine probes for each miRNA on one chip) were used to compare the expression of 375 miRNAs.
Microarrays corresponding to seasonal H1N1 influenza displayed the opposite pattern, with H1N1 probes derived from human influenza stronger in intensity than those derived from swine influenza.
Second strategy, we included in the data set two new groups of microarrays corresponding to samples from specific organs: 16 microarrays from different parts of the brain and 10 microarrays from different hematologic cell types.
Fifty-four micorrespondingrresponding to 27 responders and 27 non-responders, were performed; however, one of the microarrays in the non-responders group was of poor quality and therefore not considered further.
The microarrays corresponding to the untreated group were left out of the analysis.
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