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Lastly, the microarray chips utilized were limited to 12,488 probes so it is possible that some differentially regulated transcripts were not measured.
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A custom microarray chip was utilized to interrogate expression levels of 9,267 lncRNAs in the course of differentiation.
The term CHIP signifies that the methods use microarray chips.
For instance, promoter microarray-based approaches include the methylated CpG island amplification microarray chip (MCAM-chip) that utilizes enzymatic digestion [ 5, 6] and the methylated DNA immunoprecipitation microarray chip (MeDIP-chip) that employs antibody pulldown [ 12] to enrich methylated DNA.
For example, chromatin immunoprecipitation (ChIP) combined with DNA microarray (ChIP-chip) has been successfully utilized for the study of protein-DNA interactions.
Microarray chips were scanned using a DNA Microarray Scanner (Agilent Technologies).
Genome-wide studies using microarray chips to identify copy number changes in human cancer are becoming more common.
Microarray chips and reagents used in the experiment of a given colony were from the same Affymetrix batch.
The microarray chips were scanned with GeneChip® scanner (Affymetrix).
Commercially available microarray chips for mouse genes (Agilent MouseGE 4 × 44 K, Agilent Technologies) were used.
In biology, high throughput gene expression data obtained from microarray chips forms a matrix [13].
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