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Differences in abnormality detection are expected across microarray chips due to differences in the number/density of probes, the number of CNV-specific probes, DNA preparation and quality, flux in the levels of mosaicism during expansion or passage of individual samples, and the frequent appearance of new mosaic abnormalities in transformed cell lines [ 6].
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This is partly due to the expensive costs involved with not only with the researcher (i.e. microarray chips), but also many of the logistics involved with collection, processing, and storage of the frozen material.
Microarray chips were scanned using a DNA Microarray Scanner (Agilent Technologies).
Microarray chips and reagents used in the experiment of a given colony were from the same Affymetrix batch.
Genome-wide studies using microarray chips to identify copy number changes in human cancer are becoming more common.
The microarray chips were scanned with GeneChip® scanner (Affymetrix).
Commercially available microarray chips for mouse genes (Agilent MouseGE 4 × 44 K, Agilent Technologies) were used.
In biology, high throughput gene expression data obtained from microarray chips forms a matrix [13].
Virus detection and genotyping were assessed using the FDA_EVIR microarray chips described in previous study (Chen et al. 2011).
DPCR is capable of absolute quantification of very low copy numbers of DNA based on the high-throughput microarray chips.
The purified biotin-labeled cRNA samples were hybridized to microarray chips (GeneChip Mouse Genome 430 2.0; Affymetrix, Santa Clara, CA).
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