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Thanks to the automatic microarray annotation tool MADGene [ 70] (see also Additional File 3, part 6), MADMuscle analyzes all muscle-related data sets from GEO in a fully automatic way.
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Functional annotation and enrichment analyses were carried out with the DAVID microarray functional annotation tool [ 47] and with the AmiGO [ 48] version 1.7 from the Gene Ontology [ 49, 50] database during the period of July to October 2010, as well as from published literature.
Biologic analysis of microarray data was performed with DAVID annotation tool (http://david.abcc.ncifcrf.gov/) [ 64. SAM was performed in Excel as previously described) [ 1].
With all the tools available for microarray annotation there is still a large portion of probes whose annotation remain unknown and need a one by one search in the public databases.
Biologic analysis of microarray data was performed with the DAVID annotation tool [ 29].
G.S. annotated the data; W.J. constructed the annotation tool; D.C., G.S., W.H., V.Z., F.D., and W.J. developed the annotation manual.
Ramos, A. H. et al. Oncotator: cancer variant annotation tool.
Ramos, A.H. et al. Oncotator: cancer variant annotation tool.
Annotations for current work are being done with the Extensible Human Oracle Suit of Tools (eHOST), an open source annotation tool.
This paper proposes a classification of annotation tool design, taking account of differences in authoring methods and roles of annotation.
The annotations were performed using the FEELTRACE [77] emotion annotation tool.
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