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As all plants for this experiment were grown side-by-side in a randomized design and all RNA extraction and microarray analysis conducted simultaneously, this difference is likely a valid biological observation rather than due to experimental error.
These findings are supported by microarray analysis conducted on cardiomyocytes subjected to hESC-conditioned medium, demonstrating that MAPK pathway signaling was among the main induced signaling cascades [ 22].
To date, there are few reports of bacterial mRNA expression-profiling using whole genome microarray analysis conducted in conjunction with metabolomics [ 24].
SAL conceived the project, designed the experiments, prepared RNA for microarray analysis, conducted most experiments, analyzed data, wrote the manuscript, and edited the manuscript with the other authors.
In a microarray analysis conducted on mice fed a choline-deficient L-aminoacid-defined diet, miR-155 was found to be upregulated at early stages of NASH-induced hepatocarcinogenesis, as well as in primary human HCCs compared to matching liver tissues [ 88].
Microarray analysis conducted to compare baseline changes in the gene expression between K56-2, RSF34 and RSF34 4000B show that there are many genes whose expression are substantially upregulated in RSF34 compared to K56-2 (Additional file 5 Table S1, and Table 3).
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MH conceived the study, participated in its design and coordination, performed the microarray statistical analysis, conducted the HIGK growth analyses experiments, and helped to draft the manuscript.
RHB developed the EST library, conducted most of the analyses and drafted the ms. XW dissected discs and isolated RNA for microarray analysis and conducted qrtPCR.
Microarray analysis was conducted using RNA isolated 12 h following ClsA treatment of leaves.
The experiments for microarray analysis were conducted in biological duplicate, and samples were collected at the time points indicated in the results section.
A time-series microarray analysis was conducted on the photosynthetic ciliate using an oligochip containing 15,654 primers designed from EST data of the cryptophyte prey, Teleaulax amphioxeia.
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