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Microarray Analysis (Dataset I and II).
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This profile of gene expression is similar to that found by MacDonald and colleagues in their analysis of gene expression in Q111 versus Q7 cells (microarray analysis, GEO Dataset GSE21237; Lee et al, 2007).
An unbiased analysis of gene changes in Q111 cells subjected to structurally diverse TG2 inhibitors resulted in broad normalization of not only cytochrome c and PGC-1α, but also several hundred other genes dysregulated by mhtt in Q111 cells (Fig 6A, microarray analysis – GEO Dataset GSE21237).
To ascertain the quality of RNA used in microarray analysis, similar datasets of breast cancer tissue generated with the same CodeLink platform were downloaded (GEO accession numbers: GSM144855 to GSM144858) and compared with the liver microarray datasets.
'transcription factor activity'nucleosomeome' and 'programmed cell death' were among the most represented gene ontology (GO) categories (Supporting Information Fig S10, microarray analysis- GEO Dataset GSE21237).
Forty-nine human tumor xenografts at in vivo passages 1, 4 and 10 were subjected to cDNA microarray analysis yielding a dataset of 823 Affymetrix HG-U133 Plus 2.0 arrays.
In this study, we succeeded in obtaining a large-scale catalog of marking-specific genes and stage-specific genes from the swallowtail butterfly larvae by microarray analysis based on EST datasets.
The dataset GSE2669, GSE2701 and GSE3438 contributed by Boussioutas A[ 11], Chen X[ 12] and Kim S[ 13] respectively were chosen for conducting microarray analysis because these three datasets contained relatively more cases of normal and gastric cancer (10 normal ones and 64 cancers for Boussioutas A et al; 22 normal ones and 90 cancers for Chen X; 50 normal ones and 50 cancers for Kim S).
Complete dataset for microarray analysis.
First dataset includes microarray analysis of 7-day-old rice seedlings treated with indole-3-acetic acid (IAA) and benzyl aminopurine (BAP) up to 3 h each [ 38].
Second dataset includes microarray analysis of root and leaf tissues of two-week-old seedlings treated with trans-zeatin (tZ) for 30 min and 120 min [ 39].
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