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Microarray analyses based on differentially expressed genes (DEGs) have been widely used to distinguish samples across different cellular conditions.
In cDNA microarray analyses based on human cancer tissues, including breast cancer, Kidokoro et al, (2008) found Cdc20 to be overexpressed in a large set of human malignancies.
Microarray analyses based on individual genes are highly dependent on the exact gene content of the microarray used in the study, and thus on the chosen microarray platform.
Microarray analyses based upon individual datasets often identify an exceptionally large number of genes, which limits the utility of microarray data as a tool for selecting candidates in follow-up studies.
Moreover, all 25 stamen-enriched genes identified through the intersection of MPSS and the dissected floral organ microarray results [ 16] concur with previous microarray analyses based on comparisons of homeotic mutants [ 10].
A new genome browser based on the Google map engine, called the X::Map Genome Browser [ 5], contains genomes of three mammalian species and is specialized for supporting microarray analyses based on the Affymetrix platform [ 6].
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Most of the rice microarray analyses were based on these chips.
Hybridization, microarray analysis and statistical analyses, based on two independent biological replicates and two dye-swaps (i.e. four arrays), were performed as previously described [129], [131].
Other transcriptome analyses based on microarray or suppression subtraction hybridization also identified SOX4 as an abundant protein in human MBs [ 33, 34].
(DOCX 325 kb) Additional file 7: Expression analyses based on microarray data of genes presented with FUS, EWS, FUS and EWS, and Ac-H3K9 ChIP-seq peaks.
Several gene expression analyses based on microarrays have also been conducted [ 21- 25].
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