Sentence examples for methods with bootstrap from inspiring English sources

In Table 2, all true splits and splits reconstructed by the six methods with bootstrap value larger than or equal to 10 for the network data are listed.

All phylogenetic analyses were performed with MEGA v5.05 (Tamura et al. 2011) using maximum-likelihood (ML) methods with bootstrap values from 10,000 replicates.

Table 1 lists all true splits and splits reconstructed by the six methods with bootstrap values larger than or equal to 15 in 100 runs for the tree data.

Phylogenetic tree construction was performed on the amino acid alignment using maximum parsimony and maximum likelihood methods with bootstrapping of 100 times.

Paralogs were removed and the query sequence plus resultant hit sequences were used to infer the evolutionary history using the Neighbor-Joining [ 75] and Maximum Likelihood [ 76] methods with bootstrapping (1000 replicates) using MEGA5 [ 77].

Phylogenetic tree was constructed using neighbor-joining method with bootstrap (1000 replicates) by Kimura 2-parameter model using MEGA 5.1 program.

Phylogenetic trees were constructed using the MEGA 6.0 software program (Tamura et al. 2013), based on representative sequence for each OTU/aOTU, by neighbor-joining (NJ) method with bootstrap values calculated from 1000 replications.

ClustalW [93] multiple protein alignments were used to construct phylogenetic trees as determined by the Neighbor Joining method with bootstrap re-sampling (detailed in the legends for Figures 1), using MEGA3.1 [94].

The alignments files generated were then submitted to the graphical interface of SeaView version 4 software [40] to construct phylogenetic trees using the neighbor-joining method with bootstrap of 1000 replications.

maximum likelihood method with bootstrap replicates set as 1000.

The neighborhood joining method, with bootstrap values of 2000, was utilized to conduct the phylogeny test.