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Resnik's and Lin's methods with average of the best match (funSimMax) performed better than other methods in most of these evaluations.
C24 was the main n-alkane for all three extraction methods, with average concentrations of 9, 9, and 13 ng/μL for shaking, ASE, and ultrasound extraction, respectively.
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We did not find any significant differences in the number of reads that mapped back to known miRNA sequences across methods, with averages of 96.92 % (Novex), 96.45 % (PPS), 96.3 % (AMPure) and 96.24 % (control) (Table 2 and Fig. 2d).
The comparison of the predicted densities with those obtained by measurement confirmed the reliability of the neural network and the group contribution method with average absolute errors of 0.14 and 2.03%, respectively.
Cluster analysis of the histology patterns was performed with the BioNumerics software, version 4.0 (Applied Maths, Kortrijk, Belgium) using the unweighted pair group method with average linkages (UPGMA) and the Dice coefficient to analyze the similarities of the patterns.
The dendrograms were constructed after image capture and analysis by Pearson's correlation coefficients (r), and cluster analysis was performed by the unweighted pair group method with average linkages (UPGMA) using BioNumerics software (Applied Maths, Ghent, Belgium).
Dendrograms were constructed after image capture and analysis by Pearson correlation coefficients (r), and cluster analysis was performed using the unweighted pair group method with average linkages (UPGMA), using BioNumerics software (Applied Maths, Ghent, Belgium).
The cluster analysis was performed using a hierarchical method with average linkage and Euclidean distance metrics.
In this setup, the combined PCFG was the best method with average A U C R O C of 0.58.
PFGE patterns were compared by using the Dice coefficient and clustering by using the unweighted-pair group method with average linkages (Bionumerics version 5.10; Applied Maths Inc., Austin, TX, USA).
Genetic similarities were inferred from dendrograms created using the unweighted pair-group method with average (UPGMA) analysis of the XbaI mrp PFGE patterns using the Dice coefficient with a 1.5% tolerance for the band migration distance.
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