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Following these searches, 630 sequences meeting criteria for KAP-β membership (see methods) were retrieved and 622 of these sequences were subjected to the analysis presented in this section.
Mitochondrial sequence data for each taxon included in the plastome analysis that was sequenced using NGS methods were retrieved from the Illumina read files.
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DE genes (only protein coding genes were considered) detected by IMM were intersected with DE genes detected by TMM and DE genes only detected by one method were retrieved.
Patient demographics and data regarding severity of illness, presence of co-morbidities and respiratory virus sampling method were retrieved from case notes.
Next, top-ranked nodes of a particular scoring method are retrieved from the cytoHubba tab in Cytoscape control panel, listed in the result panel, and the sub-graph of these selected nodes are shown in the main window with a color scheme from highly essential (red) to essential (green).
For all methods, genomic data were retrieved for the genome builds listed in Table 1.
Methods and applications were retrieved from literature concerning behavior change techniques and study protocols of previous studies [ 40, 50, 51].
Data on the method of detection were retrieved from the database of the Dutch screening organization.
Using BLASTN method, I2 homologues (>2,500 bp) were retrieved from the sequenced tomato genotype Heinz 1706 [ 39] and the sequenced potato genotype DM [ 40].
Also, data on the serum levels of immunoglobulin (Ig) M-RF (IgM-RF), which were routinely determined by a nephelometric method (normal values 0 13 U/ml), were retrieved by chart review.
With this sensitive 2-step MDA method, we assessed how ensemble patterns were retrieved during trace recall.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com