Sentence examples for methods the options from inspiring English sources

For both methods, the options for the gamma model of rate heterogeneity and the JTT amino acid substitution model were used.

(XLSX 62 kb) Additional file 12: Comprises of additional details of the methods, including the options and parameters of the tools used for processing of the reads, known miRNA expression profile generation, normalization and clustering and novel miRNA prediction pipeline.

In addition, it may be described as a greenfield method, whereby the options of selecting potential locations are not constrained by a public office or a problem owner.

The codeml program from the PAML package (Yang 2007) was used to calculate dN and dS using the ML method (using the options seqtype = 1, runmode = -2 and CodonFreq = 2 in the codeml.ctl files).

We have introduced a new method, called the option-bias method, for detecting social learning in animal populations.

After a comparison of both methods, the second option was selected for the calculations.

This is particularly relevant for gradient based fitting methods (the default option in the toolbox), as convergence to a global minimum is not always guaranteed, and an unlucky choice of starting values may end up in a local minimum.

Moreover, DNA-based methods offer the option of storing samples until their analysis, which could be an important advantage.

As the Exhaustive Method runs indefinitely for the pair‐wise combination for the entire set of 1212 SNPs and the Forced Method is the totally irrelevant for our experiment, we used Random Method with the option of Runtime.

The governing equation is discretized by the θ-method and the option price is approximated by radial basis function based finite difference method.

Predicted proteins sequences were aligned by 'CLUSTAL Ω' and a phylogenetic dendrogram was constructed by 'Simple Phylogeny' using the neighbor-joining method with the option of 'exclude gaps'.