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We study here with molecular methods the evolutionary history of a highly diverse assemblage of subterranean beetles in the tribe Leptodirini (Coleoptera, Leiodidae, Cholevinae) in the mountain systems of the Western Mediterranean.
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For the NJ method, the evolutionary distances were computed using the p-distance and the Poisson-corrected amino acids distance; both were presented in units of amino acid differences per site.
Compared to traditional phylogenetic methods, the AAF method uses the evolutionary signal from the whole genome, including coding and non-coding regions, and small-scale structural differences, like indels, not just nucleotide substitutions.
Two major optimization approaches are commonly adopted; the gradient-based nonlinear optimization method and the evolutionary based method.
Humans have acquired these methods during the evolutionary process.
Genetic Algorithms (GAs) are the most popular used methods of the evolutionary algorithm family.
This work is focused in the development of methods for the evolutionary design of artificial neural networks.
Current methods for the evolutionary synthesis of heat exchanger networks (HENs) using the concepts of paths and loops, do not guarantee optimality nor do they address the issue of the feasibility of an evolutionary modification step.
(4) The current standard methods involve the evolutionary models.
Summary: TOPALi v2 simplifies and automates the use of several methods for the evolutionary analysis of multiple sequence alignments.
Doctors who understand these phylogenetic methods and the evolutionary biology behind them will be better prepared to judge the significance of research findings such as those summarized above.
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