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Both methods gave equivalent results.
Using a two-sided t test, the continuous droplet value was compared with the burst levels above the LOQ, which allowed us to conclude that, at the 95% confidence level, the two methods gave equivalent results.
All microarray data used in this analysis was processed and normalized using Affymetrix Suite 5.0 or MAS5 Software (as implemented in the R statistical package [ 45] the two normalization Methods gave equivalent results. For biclustering analysis (see below), signal values were converted to log base 2 ratios with the treatment condition compared to its relative baseline condition (control).
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When implemented, the AB & TFB methods give equivalent results in a variety of situations relevant to biology.
Local and global assays of whole-brain glucose utilization with different methods give equivalent results, but global assays cannot detect large changes in small structures.
Deposition in the right caudal lobe is also less likely than the other right lobes to be significantly different between the two exposure methods given equivalent doses, particle formulations, and animals used.
As estimates of divergence based on site-counting and maximum-likelihood methods gave qualitatively equivalent results, only counting estimates are shown here (for a discussion of the different methods, see Bierne and Eyre-Walker 2003).
Both methods to assess the dendritic stratification gave equivalent results and because the vertical section confocal analysis was less labour intensive, it was used in all our experimental treatments.
4-min incubations with substrates gave equivalent results.
Less stringent selections with more genes gave equivalent profiling.
Confidence in our results was gained from the fact that for equivalent settings of the parameters all three clustering methods gave broadly the same grouping of expression profiles.
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