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Each of these methods assigns a conservation score to each site i, based either on the evolutionary history of that site alone (in the case of GERP, LRT and SCORE) or based on the evolutionary history of site i and its surrounding sites (in the case of PhastCons).
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That is, in cases where both methods assigned a base identity at a particular sequence position, those assignments were always identical (data not shown).
Our methods assign a command for each linguistic event and also take care of removing those commands that are not necessary.
These methods assign a propensity value to each AA in the queried protein sequence based on knowledge of the AAs physical and chemical properties.
Labeling methods classify samples as "outlier" or "non-outlier", while scoring methods assign a continuous outlier score to each sample.
Traditional screening methods assign a score to every single SNP and select a subset of SNPs with high scores.
The other two methods assigned a substantial amount of sequence data incorrectly to bins at the family level or below.
Only those taxa are shown for which at least one of the methods assigned a minimum of 1.5% of the sequences in the data set.
Suffice it to say that these methods assign a score based on the maximum number of residues that can be superimposed at one or more given distance threshold.
While some effort has been made to incorporate correlation among neighboring probes into the test statistics, most methods assign a score to, and test the significance at, each individual probe locus [ 14, 15].
Referred in the following as rankers, these methods assign a weight to each feature according to some scoring criterion that evaluates the degree of correlation between that feature and the target class.
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