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For NC, Chi-square and RLC, we select top K GO terms ranked by these methods as predicted functions of an unknown protein and also ensure that the corresponding scores are larger than zero (protein-GO term relationship score for RLC, GO term frequency score for NC and Chi-Square).
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The validation results also confirmed the robustness of the method as predicted by Fusion AE®.
The tables demonstrate that the convergence speed of the DE Sinc Nyström method is much faster than that of the SE Sinc Nyström method, as predicted.
Specially, we select top 1167 proteins ranked by each method as predicted essential proteins.
Since these methods do not provide scores for individual residues, we used the residues in the top three sites identified by each method as predicted active site residues.
This analysis affords a means of characterizing those sequences that are misclassified by several sequence-based coreceptor prediction methods, as well as predicting the coreceptor using the location of the sequence in sequence space and of relating this location to the CD4+ T-cell count of the patient.
These two methods are, as predicted previously, feasible for a routine screening of tomato homogenates with the trans-lycopene concentration between 20 and 60 μg g−1 FW. 17 It is anticipated that the overall performance of the OW and PA methods can be further improved.
If the NSH method worked as predicted, one would expect most clones selected to contain cDNA inserts from genes not expressed in glucose-grown fungus but induced by forcing the fungus to utilize a complex carbohydrate as its carbon source or de-repressed after removal of glucose.
Grouping different sequences with similar structural properties for example, will always be more difficult for sequence-based methods, as was shown for predicting prokaryotic TF binding sites.
As predicted, the method is unable to align the two range profiles.
As predicted, our method resulted in an enrichment of non-ubiquitously expressed genes totaling 57% of the annotated contigs of the enriched library versus 35% in the control library.
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