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Methods and loci are described in [37].
However, the relationships among CASH plastids remains controversial, as differing topologies are recovered in phylogenetic analyses of chloroplast genes using various methods and loci [ 7- 14] (see Green [ 15] for review).
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A small subset of promising loci is identified in the first stage, normally using single locus methods, and multi-locus methods are used in the later stage(s) to model interactions based on the selection in the first stage.
In the third step, we make a novel attempt to estimate the reference model bias by using the relative 1-CN class difference (described in details in Materials and Methods) between loci and some genetic information.
Arrays were normalized using our implementation of the RMA method [22] and locus information for probesets was added from the authors' tabular annotation file.
We identified and classified genomic loci generating siRNAs based on previous methods [ 24],[ 25] (Methods), and these siRNA loci were further defined in terms of their dominant siRNA population representing more than 50% of the total siRNAs at a locus.
Methods and Results: Microsatellite loci were enriched in a genomic sample and isolated using pyrosequencing.
Methods and Results: Sixteen loci were tested on a panel of 24 individuals from different populations.
Figure 7 highlights the lack of consistency between the legacy methods and the multi-locus methods, and amongst themselves.
Figure 3(a and b) shows the hotspots found by our method and two-locus epistasis test.
Figure 4a and 4b shows epistatic interactions identified by our method and two-locus epistasis test, respectively.
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methods and perspectives
methods and ways
methods and questions
methods and topics
methods and systems
methods and others
methods and implants
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methods and improvements
methods and biomarkers
methods and functions
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methods and filters
methods and samples
methods and databases
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