Sentence examples for methods and default from inspiring English sources

Recommendations on methods and default values for assessing carbon stocks and emissions are provided by the IPCC Good Practice Guidance [3] and Greenhouse Gas Inventory Guidelines [13].

An intra-specific phylogeny was produced using maximum likelihood (ML) methods and default settings in the program RAXML 7.2.7 [ 51].

Recommendations on methods and default values for assessing carbon stocks and emissions are provided by the IPCC Good Practice Guidance [ 3] and Greenhouse Gas Inventory Guidelines [ 13].

A Non-linear regression was also performed in XLstat using the least squares method and default functions.

We used the maximum likelihood method and default Nelder-Mead algorithm in the 'mle2' function of R (package 'bbmle' [44]) to estimate parameter values when fitting the three one-dimensional functions to the seed density vs. distance data for each of the four tree groups (SF, SM, LF, LM).

qPCR reactions were conducted using the StepOne Plus system and software (Applied Biosystems) using a relative standard curve method and default reaction parameters.

We used the family-wise error rate (fwer) for type I error adjustment, step-down max T (sd.maxT) for method and default values for others in MTP.

The resulting alignments were used to perform phylogenetic analysis conducted with the program MEGA version 3.1 [ 42] using the Neighbour-Joining method and default parameters.

The scaffold content of each cluster was aligned with Mafft 6.864 b, using the L-iNSI method and default parameters (Katoh et al. 2005).

Primers were designed using the PrimerExpress software (version 3.0) (Applied Biosystems, Darmstadt, Germany) with the Taq-Man MGB Quantification method and default parameters (Additional file 2: Table S2).

Sequences were aligned using the L-INS-i method and default alignment parameters in MAFFT (Katoh et al. 2005), and Modeltest 3.0 (Posada and Crandall 1998) was used to select appropriate models of evolution.