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'methodological difference' is a correct and usable expression in written English.
You can use it when two parties use different methods to achieve the same result, or when there is a contrast between two different methods used in an experiment or study. For example, "The results of the study indicated a clear methodological difference between the two groups."
Exact(60)
This divergence in their choice of ontological primitives reflects, not only their differing stances toward modality, but also an important methodological difference with regard to metaphysical inquiry.
We think that, due to this methodological difference, the findings of our study should be interpreted with a different biological point of view.
They deny that the distinction between understanding and explanation points to an important methodological difference.
Another methodological difference exists with respect to the reference value used for the calculation of the projected value for 2020.
The major methodological difference between the government-oriented researches and our idea is that we have introduced the Power Line Communication PLCC) technology into our proposed system design.
The main methodological difference from previous studies (Bey et al. 2008; Kozono et al. 2017) was that shoulder rotation in this study was repetitive shoulder rotation.
This methodological difference has a strong impact on the inter-annual variability of estimates as affected by harvest and natural disturbances.
Also, there is a methodological difference, namely, the transmission-based method is always affected by noise, while the other assumes uniform distribution of tissue coefficients, and thus is not affected by noise.
There is one important methodological difference between Gallup and other pollsters that nearly everyone missed in 2012 and that may explain -- at least in part -- why Gallup's numbers went wrong.
Another methodological difference between the studies is that our analysis method avoided hyperintense lesions.
The major methodological difference between these two studies is that we used a top-down approach in contrast to their bottom-up approach.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com