Sentence examples for method with gaps from inspiring English sources

The final local alignment uses a Smith-Waterman method, with gaps to support the detection of small indels.

A phylogenetic tree was constructed by Neighbor-Joining, tie breaking = systematic, distance corrected by the Poisson method with gaps distributed proportionally and 1,000 bootstrap replicates.

Phylogenetic analyses were conducted by equally weighted maximum parsimony (MP) method, with gaps treated as missing data using PAUP, and by neighbor-joining (NJ) method, based on Kimura 2-parameter model using MEGA4.1Beta [ 20].

The mutated gene mixture was used to transform lithium acetate-treated EBY100 cells with NcoI/ NotI-digested pYD2 vector, using the TRAFO method with gap repair [ 29].

Respondents acknowledged that stock-outs can limit access for potential users by delaying the initiation or continuation of a method, with stop-gap measures (such as condoms) providing less effective pregnancy prevention.

Finally, we compared our method to itself but with gaps disabled.

For comparison, the modified structures (with various portions deleted) were then superpositioned using the EM algorithm and using the traditional method which omits columns with gaps.

Zhang et al. compared this gap closure method with Sanger sequencing for 362 gaps ranging from 500 bp to 5 kb from 16 diverse genomes [40].

Using alignment of read sequences to reference genomes with gaps, the method allows the precise identification of SVs covered by such reads.

Neighbour joining trees were constructed in MEGA 4 using the maximum composite likelihood method, with all positions containing gaps and missing data eliminated from the dataset.

Complete genomic sequences of M segment from 58 hantavirus strains were downloaded from the National Center for Biotechnology Information (NCBI) website and phylogenetic tree was performed using Mega 5.02 software and analyzed with the Maximum Likehood (ML) method with complete deletion of gaps.