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The MEME method indicated that 20 sites are potentially under positive selection and three of the codon sites suggested by the REL method were congruent with these.
All trees resulting from phylogenetic analysis using each method were congruent in topology, which indicated similar evolutionary relationships in respect of both E. festucae var.
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The two phylogenetic trees (Figures 2 and 3), reconstructed using the maximum likelihood method, are congruent with similar topologies.
The results for a human data set analysed with the new method are congruent with the geographical regions previously found.
Although the absolute expression ratios generated by iTRAQ and immunoblotting methods are not the same, the expression trends reflected by both methods were congruent and confirmed the aberrant expressions of candidate proteins across the MCF10AT model of disease progression.
The relative rates estimated using both methods were congruent (Fig. 4B).
The results of both methods were congruent concerning the regulatory trends and the representation of gene categories.
In general, the phylogenetic trees obtained by the different methods were congruent and displayed very similar topologies.
Nevertheless, trees obtained from different methods were congruent knowing that the two lineages shared 334 out of 837 variable sites.
For each marker analyzed (12S, ITS, COI), results obtained using distance, parsimony and likelihood methods were congruent in delimiting four Niphargus clades among our samples.
Although this latter tree was not completely resolved (tree not shown), the results from both methods were congruent and showed three strongly supported monophyletic groupings with support values at nodes > 95%.
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