Sentence examples for method we inferred from inspiring English sources

Using LDA, a state of the art Bayesian inference method, we inferred 400 potential modules from a set of 2,884 genomes and 332 taxonomic bins from 18 metagenomes.

For the prediction method we inferred DQ types from the tag SNPs.

Using this method we inferred the co-evolutionary network among 4593 Clusters of Orthologous Genes (COGs).

In each method, we inferred pharmacogenomic features with positive weights in the predictive model.

Using this method, we inferred the initiation probabilities for the 3,795 S. cerevisiae genes whose ribosomal densities have been reliably measured (Ingolia et al., 2009).

In the latter method, we inferred TFBS gains and losses between two S. cerevisiae strains, using the S. paradoxus sequence as the outgroup (reference), and gains and losses between S. cerevisiae and S. paradoxus, using the S. mikatae sequence.

Using the best-performing method, we infer normal as well as ovarian cancer GRNs, and seek independent support in the literature and via computational prediction of transcription factor (TF) binding sites (TFBSs).

By calculating similarities to known proteases and using localization prediction methods, we inferred function and localization of these hypothetical H. pylori proteins.

Using these methods, we inferred a tentative identity for a total of 522 unidentified ESTs, which represented 17% of the 3039 unidentified ESTs.

Starting with experimentally characterized regulatory differences between the pre- and post-WGD GAL genes (see Methods), we inferred an ancestral organization of the regulatory network (see Results).

Then, using a combination of interolog and expression profile-based methods, we inferred 430 interactors of Hsp70s in rice, and validated the interactions by co-localization and function-based methods.