Sentence examples for method uses secondary from inspiring English sources

Our method uses secondary structure information and PSSMs as input features.

Although HuMiTar is outperformed by PITA, we note that the latter method uses secondary structure of the target to perform the predictions while the proposed method uses only the sequence.

Method Using secondary analysis of data from a randomised controlled trial (trial registration: ISRCTN65316374) we identified predictors of depression at 1-year follow-up and moderators of the intervention (n = 791).

We also demonstrate direct detection of binding based on alkaline phosphatase in commonly used assays such as immunohistochemistry and western blotting (although more sensitive results are achieved by indirect methods using secondary anti-FLAG tag reagents).

The traditional method uses the secondary signals of both the feedforward and feedback structures to synthesize a reference signal for the feedback structure in the hybrid structure.

Finally, Emmert-Streib and Mushegian (2007) employ a method for domain identification that uses secondary structure elements as the fundamental units of structure, and they find that it performs equally well to more complicated analyses that include more detailed considerations of protein geometry and structure.

To evaluate the quality of our method, we used secondary structures from the RNA STRAND database (Andronescu et al., 2008).

As these methods typically use secondary structure prediction methods that do not allow pseudoknots, they fail to predict joint structures formed by non-trivial interactions between a pair of RNAs.

These methods mainly use secondary structural information to search expressed sequence tags (ESTs) and to mine the repository of available genomic sequences [6] [11], and they have obvious advantages, including the quick prediction of a large number of miRNAs, low costs, and the prediction of novel and non-abundant miRNAs that are usually difficult to clone directly.

Empirical evaluations using three nonredundant datasets show that our predictions provide favorable Qtotal, Qobserved, and MCC when compared with the state-of-the-art methods that used secondary structure information and PSSMs as features.

Kountouris and Hirst [ 8] developed a method based on SVM; their method uses PSSMs, predicted secondary structures, and predicted dihedral angles as input features to the SVM.