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Using UPGMA method, the phylogenetic tree was obtained, shown in Figures 2– 10.
In the NJ method, the phylogenetic analyses were conducted using the MEGA 5 program [ 53].
On the basis of the multiple alignment, analysis and neighbour-joining (NJ) computational method, the phylogenetic tree was constructed.
Using the neighbor joining method, the phylogenetic tree for each of the TF families was constructed based on the whole TF sequences.
In this method, the phylogenetic species were recognised according to the inter- and intra-specific variations of the ITS sequence, using criteria established to define phylogenetic or environmental species in previous studies [ 58- 60].
Similar(55)
In the conservation-based statistical methods the "phylogenetic relationship" in a protein family causes the "coherent correlation" of all positions [33], which is raised by sharing common ancestry.
In spite the use of several methods, the phylogenetic relationship of chaetognath is not resolved by the present study.
Three methods including the phylogenetic profiles method, the gene neighbors method and the gene fusion method were adapted to construct the genome context networks [20].
Finally, comparative genomics methods like the phylogenetic profiles methods are typically dependent on the size and nature of the reference genome set used and such dependence needs to be minimized.
One attractive method is the phylogenetic approach which Piriyapongsa et al. demonstrate for the THAP domain.
Phylogenetic tree constructed by neighbor-joining method showed the phylogenetic relations of the sequences in an unrooted-tree algorithm.
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