Sentence examples for method the alignment from inspiring English sources

With the kernel alignment method, the alignment between each feature and the ideal kernel is calculated.

Due to the library construction method, the alignment of read 1 marks the 3′ end of a transcript.

In this method, the alignment of PPI networks is formulated as a combination of the sequence similarity score of proteins and the matching score of protein interactions.

Finally, if a recombination signal is detected to be significant by all four tests (P-value < 0.05 in each method), the alignment would be splitted into two or more fragments.

In the SP serial methods, the alignment generated for fold recognition is used directly in modeling.

All conclusions presented in this work are robust relative to the alignment methods, the alignment processing, the phylogeny reconstruction methods, and the parameters used.

In most cases (77 cases out of 87, see Methods) the alignment on the parental gene included the region that surrounds the PAS of the trans-NAT.

In standard methods, the alignment algorithm, evolutionary model and numerous parameters are needed to be selected and set case-by-case according to the heterogeneity of input data.

Importantly, the lower accuracy of hmmalign compared with PAGAN is not only explained by the latter discarding the difficult queries: also for the subset of sequences aligned by both methods the alignments from hmmalign were less accurate (Fig. 5).

Again the de novo methods underperform the alignment based methods (Supplementary Fig. S12).

Statistical analyses suggest that the piecewise-uniform resampling method improves the alignment of morphology significantly.