We used the CRC dataset [ 48] to compare the signaling circuit activity method proposed here to the clipper method [ 28], as recently implemented in the Graphite Web application [ 67], and the DEgraph [ 31] method.
The PRR-TA furthermore performed better for background noise reduction than the recently implemented method in the EU of restricting the number of SDRs delivered by increasing the threshold case count to ≥5 instead of ≥3.
We also compare these three methods with the more recently implemented TILI algorithm (Mosses, 2005), which is the triplet variant of the quartet-based supertree algorithm QILI (Piaggio-Talice et al., 2004).
The reverse engineering method of gene regulatory networks, recently implemented by Laubenbacher and Stigler, is used to generate a multivariate time series with a finite set of levels.
I recently implemented a method that allows for computing RELL (Resampling Estimated Log Likelihoods) bootstrap support as described by Minh et al. (2013).
The sample size for MEOHP and MEHHP was 208 because analytical methods for the quantification of these analytes were only recently implemented in this study.
Delaware, Hawaii, Oregon, Utah, Vermont, and Washington have recently implemented vulnerable-road-user laws, which provide comprehensive methods to address cases of careless driving without felony charges.
An alternative method, initially introduced by Reverter et al. [ 17] and more recently implemented in Hudson et al. [ 18], is based on ranking TF by their absolute co-expression correlation averaged across all genes in a given module.
Beyond this, it implements a method for identifying the so-called rogue taxa (Pattengale et al., 2011), and I recently implemented options for calculating the TC (Tree Certainty) and IC (Internode Certainty) measures as introduced by Salichos and Rokas (2013).
