Although similarity-based methods work on short reads, they explore the taxonomic content of metagenomic data according to known genomes rather than classifying reads.
We used the conventional Hungerford method on short-term cultures for 50 hr, with all cells being in the first division.
Instead of focusing on a narrow region of configurations, this paper examines the performance of prediction methods on short, medium and long CFST columns.
In Figure 3, the performances of different methods on short data sets (L<14) are displayed which is based only on xor-genotypes.
To the best of our knowledge, this study is the first to compare species tree estimation methods on short gene sequences (with fewer than 100 sites), and the first to explore SVDquartets on simulated data in comparison to other coalescent-based methods and to concatenation.
In [41], a method based on short term state forecasting is proposed that is able to detect false data injection in smart grids.
An adaptive protection method based on short circuit current characteristics is presented in [30, 31], which counters for different wind power output, short circuit current level and wind farm types.
Here we propose to use a simple and tested method based on short oligonucleotide usage [ 6] to evaluate the amount of HTs in the genome of Aspergillus fumigatus.
A method for prioritization of candidate disease genes using random walk analysis was tested on 110 disease gene families and significantly outperformed methods based on distance measures such as linkage-based methods or methods based on shortest paths to disease proteins [ 41].
In this study, we address the following questions: 1 How does SVDquartets+PAUP* compare to ASTRAL-2 and NJst, two of the best performing statistically consistent summary methods? 2 How do the statistically consistent methods we study compare to a concatenated analysis using maximum likelihood? 3 How do all the methods perform on short sequences?
Here, such type of methods focuses on short stretches of amino acid N- and C-terminus, because structural studies of published KAT domains coupled with peptide substrates typically do not exceed 14-20 aa in length [ 4, 10].
