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The tree was constructed using the Neighbor-Joining method of MEGA 7 software.
The phylogenetic analysis of pol aligned sequences was performed by the maximum-likelihood method of MEGA version 5.05.
The sequences alignments were performed using CLUSTAL_X [ 19], and a phylogenetic tree was constructed from evolutionary distances using the neighbor-joining method of MEGA 5 program package [ 20].
Also on reviewer's suggestion, we chose sequences from five nonpathogenic proteobacteria and recreated the tree by using Maximum likelihood (ML) method of MEGA.
Finally, phylogenetic trees were constructed based on alignments using maximum likelihood (ML) method of MEGA 6.0 (Molecular Evolutionary Genetics Analysis) with complete deletion option parameters engaged [ 113].
Both sequences of goat and blackbuck were aligned with retrieved sequences using Clustal (W) method of Mega 5.2 software and percent identity and divergence were determined.
Similar(53)
The phylogenetic tree was viewed by using the neighbor-joining method of the MEGA 4.1 software (Tamura et al. 2007).
A phylogenetic tree was constructed using the neighbor-joining method of the MEGA 4 computer program [36].
A dendrogram was constructed based on the concatenated sequences of the eight loci using the neighbour-joining method of the MEGA 6.0 software and bootstrap analysis with 1,000 resamplings [ 27].
Using the maximum likelihood statistical method on MEGA Version 5, a phylogenetic tree with HRPKSs of known natural products was constructed.
Trees based on metacaspase P20 domain and cyanobacterial 16s rRNA were constructed using NJ methods of the MEGA package (Version 4.0) [ 46], and the reliability of each branch was tested by 1000 bootstrap replications.
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