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One rarely used method of inference, gene tree parsimony, can infer species trees from gene families undergoing duplication and loss, but its performance has not been evaluated at a phylogenomic scale for EST data in plants.
BUCKy is a Bayesian method of inference that combines information from individual trees to infer one tree [32]; it differs from standard consensus tree approaches in considering the support for each clade in each input tree during inference of the final tree.
Inferring trees from alignments of sequences necessitates a reliable method of inference, such as maximum likelihood (ML) or Bayesian inference (reviewed in Yang and Rannala 2012).
Yang, Z., Kumar, S. & Nei, M. A new method of inference of ancestral nucleotide and amino acid sequences.
Second, we use maximum likelihood as the method of inference.
The Minimum Description Length (MDL) principle is solidly based on a provably ideal method of inference using Kolmogorov complexity.
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The methods of inference used in the Florida case may also be adapted to the federal context.
Judge, G. G., and T. A. Yancey (1986), Improved Methods of Inference in Econometrics, Amsterdam: North-Holland pagesshing Co., 291 pages.
Tree-structured graphical models permit efficient inference via message-passing, but there are many other methods of inference.
Linguists and religious scholars make connections among languages and among sacred texts, employing the same methods of inference evolutionary biologists use to reconstruct life's history.
This multivariate framework is discussed, paying particular attention to methods of inference by permutation.
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