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In order to surmount this, we employed a novel method of alignment decomposition.
We also employed "Multiple Alignment Using Fast Fourier Transform" (Katoh and Kuma 2002) as an alternative method of alignment, but found no difference in our findings from implementing the "classic" methods of alignment (data not shown).
His method of work employed the same principles.
(2003) is the method of instruction employed.
Taken together, these results indicate that the extreme variation of the evolutionary rates of core prokaryotic genes detected in this work is a robust observation that is not due to artifacts of either alignment methods or of methods employed to estimate the evolutionary distances.
The estimation of the fraction of genes that have experienced positive selection by maximum likelihood is very sensitive to the method of isoform selection employed, both when alignments are constructed with MAFFT and with Prank+F.
However, this can be attributed to the manually curated (gene-specific) sequence alignments employed in the prediction method.
Several methods of smuggling were employed.
The results from the VISTA database were not as clear when the less sensitive alignment method was employed.
Appropriate alignment methods were employed for the required/respective OR cluster dataset.
A variety of methods have been employed for such analyses, including dynamic time warping, linear alignment algorithms and multi-segment alignment methods.
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