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The proposed method is freely available as a web service at http://www.way2drug.com/RA/.
The software employing this method is freely accessible from http://www.p-graph.com/pnsstudio, TU Graz [9].
The script of our method is freely available online at http://www.bi.cs.titech.ac.jp/mga_glide/.ac.jp/mga_glide/
A web server for the proposed method is freely available at http://bioinformatics.ustc.edu.cn/pptm/.ustc.edu.cn/pptm/
A comprehensive MATLAB toolbox implementing the method is freely available; a python implementation providing the basic capabilities is also available.
This prediction method is freely available from URL http://www.imtech.res.in/raghava/icaars/.
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A web server (PreGly) that implemented the proposed method was freely available: http://202.198.129.220 8080/GlycationPre/.
A software package implementing our methods is freely available at http://bogdan.bioinformatics.ucla.edu/software/.ucla.edu/software/
The PHYLIP package was used because it offers many different analysis methods, is freely available and is commonly used [ 44].
Software to simulate transcript sets, expression values and sequence reads under a wider range of parameter values and to compare sensitivity, precision and signal-to-noise ratios of different methods is freely available online (https://github.com/boboppie/RSSS) and can be expanded by interested parties to include methods other than the exemplars presented in this article.
Many of these methods are freely available through the internet, however, few standalone implementations are available.
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