Therefore, in light of the above facts, we study an iterative method that implements two matrices: ((a_{n,k})_{n,kinmathbb{N}}inmathfrak{M}) to compute our iterations; and ((b_{n,k})_{n,kinmathbb{N}}inmathfrak{T}) to regularize the mapping involved.
RAPIDR implements two methods from the literature: the normalized chromosome value (NCV) method (Sehnert et al., 2011) and weighting of counts by GC content bin (Fan and Quake, 2010).
NSA implements two methods (user-selectable) to compute the references: the first one uses standard medians and the second one uses weighted medians to minimize batch effects.
dnet implements two methods for characterising sample relationships (here relationships across tumour types): one is to build a neighbour-joining tree, the other is to create a self-organising landscape.
Because that method was not as efficient in the calculation of the Class II reflectance, we significantly enhanced that method by implementing two modifications.
We demonstrate the capabilities of the method by implementing two alternative traffic management strategies designed to minimize the negative impacts of trucks and buses in urban environments.
X. Dai developed the new data fusion method, implemented the two novel data sources in TF target gene prediction, and performed all the simulations.
The system implements four methods which are generally accepted for the given analyses and which have been algorithmized and applied in the GIS environment many times.
It implements eight methods for detection of CNAs, gains and losses of genomic DNA, including all of the best performing ones from two recent reviews (CBS, GLAD, CGHseg, HMM).
The package mmnet implements three methods to measure the differential abundance between different samples, including odds ratio (OR), RANK, and Jensen-Shannon Diverge (JSD).
