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We estimated the time of divergence between the western North Atlantic and Mediterranean populations using a coalescent-based method implement in IMa [ 45].
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The method implemented in four steps.
The gating method is based on a method implemented in [16, 17] by Dugan.
The plane-wave pseudopotential method, implemented in the Quantum Espresso code, was used.
Further structural optimization was performed using the AM1 semi-empirical method implemented in AMPAC 8.16 [15].
For the numerical simulation, the collocation method implemented in our MATLAB code bvpsuite has been applied.
Specifically, the restoration method implemented in this work, requires both the transposition and the inversion.
The interpolation method implemented in the used coregistration software is trilinear interpolation.
We used the LETKF assimilation method implemented in the JMA-NHM.
For example, the newest PCA method implemented in EIGENSOFT [8] was usually not studied.
We took this point into account by using the method implemented in MERLIN [79].
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